Input file reference¶
Use the package to create and validate the files Aurora accepts.
Slide archives¶
pack_tiles creates a checked archive from your slide. Use read_archive to
validate it before upload. The preparation guide shows both calls.
Local representations¶
Published model that reads embeddings: DeepSpot-M, release deepspot-h/global/all@1.0.0.
From us this route needs a key. The weights for the local step download once, onto your machine.
Prepared slide models¶
Published model that reads patches: DeepSpot-M, release deepspot-h/global/patches@1.0.0.
From us this route needs a key, and nothing else.
Sample profile tables¶
| Part | Contract |
|---|---|
| Layouts | long, wide |
| Units | counts, tpm |
| Long layout columns | gene_id, then one value column named by its unit (counts, tpm) |
| Scale | as measured — counts or TPM; a table already log-transformed is refused |
Submission size¶
patches takes at most 50,000 items. embeddings takes at most 50,000 items.